UltraScan Version

Manual


SOMO - Add/Edit Atom Lookup Table Module:

SOMO Add/Edit Atom Lookup Table SCREEN

In this module, you can edit the atom table, where the atomic groups present in PDB files need to be defined and their parameters (molecular weight and radius) loaded from the hybridization table. In addition, for SAXS simulation this table is also linked to the SAXS coefficients table, and the excluded volume for each atomic group is defined in alternative to that of the bare non-hydrogen atom taken from the SAXS coefficient table. Load the hybridization file first, then the atom file if one exists, and then the SAXS coefficients file. Add new atoms to it by filling out the fields and clicking on Add Atom to File. You can also delete an atom (Delete Atom) from the file.

After editing is completed, the updated table can be saved by clicking on "Add Atom to File"


www contact: Emre Brookes

This document is part of the UltraScan Software Documentation distribution.
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The latest version of this document can always be found at:

http://somo.uthscsa.edu

Last modified on April 30, 2012.